J3_7UNW_038

3D structure

PDB id

7UNW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pseudomonas aeruginosa 70S ribosome initiation complex bound to IF2-GDPCP (structure II-B)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

CUUGACAU*ACAG*CUUACG

Length

18 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7UNW_038 not in the Motif Atlas

Homologous match to J3_4LFB_016

Geometric discrepancy: 0.1628

The information below is about J3_4LFB_016

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76475.2

Basepair signature

cWW-tWH-F-tHS-cWW-cWW-F-cWS-cWS-cWW

Number of instances in this motif group

2

Unit IDs

7UNW|1|a|C|984
7UNW|1|a|U|985
7UNW|1|a|U|986
7UNW|1|a|G|987
7UNW|1|a|A|988
7UNW|1|a|C|989
7UNW|1|a|A|990
7UNW|1|a|U|991
*
7UNW|1|a|A|1038
7UNW|1|a|C|1039
7UNW|1|a|A|1040
7UNW|1|a|G|1041
*
7UNW|1|a|C|1204
7UNW|1|a|U|1205
7UNW|1|a|U|1206
7UNW|1|a|A|1207
7UNW|1|a|C|1208
7UNW|1|a|G|1209

Current chains

Chain a

16S Ribosomal RNA

Nearby chains

Chain n

30S ribosomal protein S14