J3_7UPH_005

3D structure

PDB id

7UPH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a ribosome with tethered subunits

Experimental method

ELECTRON MICROSCOPY

Resolution

4.18 Å

Loop

Sequence

CAAG*CUAGUAA*UGAAUACG

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7UPH_005 not in the Motif Atlas

Homologous match to J3_4LFB_002

Geometric discrepancy: 0.2117

The information below is about J3_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_25303.4

Basepair signature

cWW-F-F-cSS-F-cWW-tWW-F-tWH-F-tHS-cSH-cWW

Number of instances in this motif group

4

Unit IDs

7UPH|1|I|C|935
7UPH|1|I|A|936
7UPH|1|I|A|937
7UPH|1|I|G|938
*
7UPH|1|I|C|1343
7UPH|1|I|U|1344
7UPH|1|I|A|1345
7UPH|1|I|G|1346
7UPH|1|I|U|1347
7UPH|1|I|A|1348
7UPH|1|I|A|1349
*
7UPH|1|I|U|1371
7UPH|1|I|G|1372
7UPH|1|I|A|1373
7UPH|1|I|A|1374
7UPH|1|I|U|1375
7UPH|1|I|A|1376
7UPH|1|I|C|1377
7UPH|1|I|G|1378

Current chains

Chain I

Tethered rRNA

Nearby chains

Chain b

30S ribosomal protein S7

Chain d

30S ribosomal protein S9