J3_7UPH_007
3D structure
- PDB id
- 7UPH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a ribosome with tethered subunits
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.18 Å
Loop
- Sequence
- GUUUAAUUC*GAAGAACCUUAC*GGCUAC
- Length
- 27 nucleotides
- Bulged bases
- 7UPH|1|I|A|957, 7UPH|1|I|A|974, 7UPH|1|I|G|975, 7UPH|1|I|A|977, 7UPH|1|I|U|980
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7UPH_007 not in the Motif Atlas
- Homologous match to J3_5J7L_006
- Geometric discrepancy: 0.5993
- The information below is about J3_5J7L_006
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_83516.4
- Basepair signature
- cWW-tWW-F-F-F-F-F-tSS-cWW-F-F-cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
7UPH|1|I|G|953
7UPH|1|I|U|954
7UPH|1|I|U|955
7UPH|1|I|U|956
7UPH|1|I|A|957
7UPH|1|I|A|958
7UPH|1|I|U|959
7UPH|1|I|U|960
7UPH|1|I|C|961
*
7UPH|1|I|G|972
7UPH|1|I|A|973
7UPH|1|I|A|974
7UPH|1|I|G|975
7UPH|1|I|A|976
7UPH|1|I|A|977
7UPH|1|I|C|978
7UPH|1|I|C|979
7UPH|1|I|U|980
7UPH|1|I|U|981
7UPH|1|I|A|982
7UPH|1|I|C|983
*
7UPH|1|I|G|1220
7UPH|1|I|G|1221
7UPH|1|I|C|1222
7UPH|1|I|U|1223
7UPH|1|I|A|1224
7UPH|1|I|C|1225
Current chains
- Chain I
- Tethered rRNA
Nearby chains
- Chain A
- 30S ribosomal protein S14
- Chain F
- 30S ribosomal protein S19
- Chain d
- 30S ribosomal protein S9
- Chain e
- 30S ribosomal protein S10
- Chain h
- 30S ribosomal protein S13
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