J3_7UPH_008
3D structure
- PDB id
- 7UPH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a ribosome with tethered subunits
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.18 Å
Loop
- Sequence
- CGUCAG*CGCAACC*GAUGACG
- Length
- 20 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7UPH_008 not in the Motif Atlas
- Homologous match to J3_5J7L_008
- Geometric discrepancy: 0.2108
- The information below is about J3_5J7L_008
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_08394.3
- Basepair signature
- cWW-tSS-F-F-tWH-F-F-cWW-F-cWW-F-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
7UPH|1|I|C|1062
7UPH|1|I|G|1063
7UPH|1|I|U|1064
7UPH|1|I|C|1065
7UPH|1|I|A|1066
7UPH|1|I|G|1067
*
7UPH|1|I|C|1106
7UPH|1|I|G|1107
7UPH|1|I|C|1108
7UPH|1|I|A|1109
7UPH|1|I|A|1110
7UPH|1|I|C|1111
7UPH|1|I|C|1112
*
7UPH|1|I|G|1186
7UPH|1|I|A|1187
7UPH|1|I|U|1188
7UPH|1|I|G|1189
7UPH|1|I|A|1190
7UPH|1|I|C|1191
7UPH|1|I|G|1192
Current chains
- Chain I
- Tethered rRNA
Nearby chains
- Chain A
- 30S ribosomal protein S14
- Chain X
- 30S ribosomal protein S3
- Chain Z
- 30S ribosomal protein S5
- Chain b
- 30S ribosomal protein S7
- Chain d
- 30S ribosomal protein S9
- Chain e
- 30S ribosomal protein S10
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