J3_7UPH_009

3D structure

PDB id

7UPH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a ribosome with tethered subunits

Experimental method

ELECTRON MICROSCOPY

Resolution

4.18 Å

Loop

Sequence

UG*UGUUG*CGCAA

Length

12 nucleotides

Bulged bases

7UPH|1|I|U|1085

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7UPH_009 not in the Motif Atlas

Homologous match to J3_5J7L_009

Geometric discrepancy: 0.1977

The information below is about J3_5J7L_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76043.3

Basepair signature

cWW-cWW-tSS-F-F-F-F-cWW

Number of instances in this motif group

3

Unit IDs

7UPH|1|I|U|1072
7UPH|1|I|G|1073
*
7UPH|1|I|U|1082
7UPH|1|I|G|1083
7UPH|1|I|U|1084
7UPH|1|I|U|1085
7UPH|1|I|G|1086
*
7UPH|1|I|C|1097
7UPH|1|I|G|1098
7UPH|1|I|C|1099
7UPH|1|I|A|1100
7UPH|1|I|A|1101

Current chains

Chain I

Tethered rRNA

Nearby chains

Chain W

30S ribosomal protein S2

Chain Z

30S ribosomal protein S5