J3_7UPH_020

3D structure

PDB id

7UPH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a ribosome with tethered subunits

Experimental method

ELECTRON MICROSCOPY

Resolution

4.18 Å

Loop

Sequence

CAAG*CCCAAAC*GUG

Length

14 nucleotides

Bulged bases

7UPH|1|I|A|3103

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7UPH_020 not in the Motif Atlas

Geometric match to J3_8VTW_005

Geometric discrepancy: 0.2649

The information below is about J3_8VTW_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_44702.1

Basepair signature

cWW-tSH-tWW-tHH-F-tHW-cWW-F-cWW

Number of instances in this motif group

2

Unit IDs

7UPH|1|I|C|2800
7UPH|1|I|A|2801
7UPH|1|I|A|2802
7UPH|1|I|G|2803
*
7UPH|1|I|C|3099
7UPH|1|I|C|3100
7UPH|1|I|C|3101
7UPH|1|I|A|3102
7UPH|1|I|A|3103
7UPH|1|I|A|3104
7UPH|1|I|C|3105
*
7UPH|1|I|G|3114
7UPH|1|I|U|3115
7UPH|1|I|G|3116

Current chains

Chain I

Tethered rRNA

Nearby chains

Chain k

50S ribosomal protein L34