J3_7UPH_023

3D structure

PDB id

7UPH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a ribosome with tethered subunits

Experimental method

ELECTRON MICROSCOPY

Resolution

4.18 Å

Loop

Sequence

CAUC*GUA*UUUAAAG

Length

14 nucleotides

Bulged bases

7UPH|1|I|A|4012, 7UPH|1|I|U|4013

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7UPH_023 not in the Motif Atlas

Geometric match to J3_4WF9_009

Geometric discrepancy: 0.212

The information below is about J3_4WF9_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32601.5

Basepair signature

cWW-tWH-cHW-F-cWW-tSS-F-cWW

Number of instances in this motif group

4

Unit IDs

7UPH|1|I|C|4011
7UPH|1|I|A|4012
7UPH|1|I|U|4013
7UPH|1|I|C|4014
*
7UPH|1|I|G|4039
7UPH|1|I|U|4040
7UPH|1|I|A|4041
*
7UPH|1|I|U|4055
7UPH|1|I|U|4056
7UPH|1|I|U|4057
7UPH|1|I|A|4058
7UPH|1|I|A|4059
7UPH|1|I|A|4060
7UPH|1|I|G|4061

Current chains

Chain I

Tethered rRNA

Nearby chains

Chain S

50S ribosomal protein L14