J3_7UPH_028

3D structure

PDB id

7UPH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a ribosome with tethered subunits

Experimental method

ELECTRON MICROSCOPY

Resolution

4.18 Å

Loop

Sequence

UAU*AGACUGC*GAGGAAGGUG

Length

20 nucleotides

Bulged bases

7UPH|1|I|U|1182

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7UPH_028 not in the Motif Atlas

Homologous match to J3_6CZR_025

Geometric discrepancy: 0.2522

The information below is about J3_6CZR_025

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_17791.1

Basepair signature

cWW-cSH-cWW-cWH-tWH-tSW-cWW-tWS-F-cWW-cWW-F

Number of instances in this motif group

3

Unit IDs

7UPH|1|I|U|1115
7UPH|1|I|A|1116
7UPH|1|I|U|1117
*
7UPH|1|I|A|1154
7UPH|1|I|G|1155
7UPH|1|I|A|1156
7UPH|1|I|C|1157
7UPH|1|I|U|1158
7UPH|1|I|G|1159
7UPH|1|I|C|1160
*
7UPH|1|I|G|1174
7UPH|1|I|A|1175
7UPH|1|I|G|1176
7UPH|1|I|G|1177
7UPH|1|I|A|1178
7UPH|1|I|A|1179
7UPH|1|I|G|1180
7UPH|1|I|G|1181
7UPH|1|I|U|1182
7UPH|1|I|G|1183

Current chains

Chain I

Tethered rRNA

Nearby chains

Chain W

30S ribosomal protein S2

Chain d

30S ribosomal protein S9

Chain e

30S ribosomal protein S10