J3_7UPH_029
3D structure
- PDB id
- 7UPH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a ribosome with tethered subunits
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.18 Å
Loop
- Sequence
- CCUG*CGAUAGUGAACCAGUAC*GGAAAG
- Length
- 27 nucleotides
- Bulged bases
- 7UPH|1|I|U|1534, 7UPH|1|I|U|1948, 7UPH|1|I|C|1956
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7UPH_029 not in the Motif Atlas
- Geometric match to J3_5J7L_067
- Geometric discrepancy: 0.1848
- The information below is about J3_5J7L_067
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_30040.2
- Basepair signature
- cWW-tWH-F-cWW-tSS-tHH-cSS-tWH-tSW-tHS-cWW-tWH-F-cSH-tSS-F-F
- Number of instances in this motif group
- 7
Unit IDs
7UPH|1|I|C|1532
7UPH|1|I|C|1533
7UPH|1|I|U|1534
7UPH|1|I|G|1535
*
7UPH|1|I|C|1945
7UPH|1|I|G|1946
7UPH|1|I|A|1947
7UPH|1|I|U|1948
7UPH|1|I|A|1949
7UPH|1|I|G|1950
7UPH|1|I|U|1951
7UPH|1|I|G|1952
7UPH|1|I|A|1953
7UPH|1|I|A|1954
7UPH|1|I|C|1955
7UPH|1|I|C|1956
7UPH|1|I|A|1957
7UPH|1|I|G|1958
7UPH|1|I|U|1959
7UPH|1|I|A|1960
7UPH|1|I|C|1961
*
7UPH|1|I|G|1968
7UPH|1|I|G|1969
7UPH|1|I|A|1970
7UPH|1|I|A|1971
7UPH|1|I|A|1972
7UPH|1|I|G|1973
Current chains
- Chain I
- Tethered rRNA
Nearby chains
- Chain M
- 50S ribosomal protein L4
- Chain k
- 50S ribosomal protein L34
- Chain p
- 50S ribosomal protein L20
- Chain s
- 50S ribosomal protein L23
Coloring options: