J3_7UVW_026

3D structure

PDB id

7UVW (explore in PDB, NAKB, or RNA 3D Hub)

Description

A. baumannii ribosome: 70S with E-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.37 Å

Loop

Sequence

CC*GUUGAU*AAUUG

Length

13 nucleotides

Bulged bases

7UVW|1|A|U|2829, 7UVW|1|A|A|2831

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7UVW_026 not in the Motif Atlas

Homologous match to J3_4WF9_021

Geometric discrepancy: 0.1878

The information below is about J3_4WF9_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76911.2

Basepair signature

cWW-tHS-F-F-F-cWW-cWW

Number of instances in this motif group

4

Unit IDs

7UVW|1|A|C|2810
7UVW|1|A|C|2811
*
7UVW|1|A|G|2827
7UVW|1|A|U|2828
7UVW|1|A|U|2829
7UVW|1|A|G|2830
7UVW|1|A|A|2831
7UVW|1|A|U|2832
*
7UVW|1|A|A|2878
7UVW|1|A|A|2879
7UVW|1|A|U|2880
7UVW|1|A|U|2881
7UVW|1|A|G|2882

Current chains

Chain A

23s ribosomal RNA

Nearby chains

Chain D

50S ribosomal protein L3

Chain M

50S ribosomal protein L17

Chain Z

50S ribosomal protein L32