J3_7V2N_017

3D structure

PDB id

7V2N (explore in PDB, NAKB, or RNA 3D Hub)

Description

T.thermophilus 30S ribosome with KsgA, class K2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CUUGACAU*ACAG*CUUACG

Length

18 nucleotides

Bulged bases

7V2N|1|A|C|1196

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7V2N_017 not in the Motif Atlas

Homologous match to J3_4LFB_016

Geometric discrepancy: 0.3161

The information below is about J3_4LFB_016

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76475.2

Basepair signature

cWW-tWH-F-tHS-cWW-cWW-F-cWS-cWS-cWW

Number of instances in this motif group

2

Unit IDs

7V2N|1|A|C|968
7V2N|1|A|U|969
7V2N|1|A|U|970
7V2N|1|A|G|971
7V2N|1|A|A|972
7V2N|1|A|C|973
7V2N|1|A|A|974
7V2N|1|A|U|975
*
7V2N|1|A|A|1027
7V2N|1|A|C|1028
7V2N|1|A|A|1029
7V2N|1|A|G|1030
*
7V2N|1|A|C|1192
7V2N|1|A|U|1193
7V2N|1|A|U|1194
7V2N|1|A|A|1195
7V2N|1|A|C|1196
7V2N|1|A|G|1197

Current chains

Chain A

16s ribosomal RNA

Nearby chains

Chain N

30S ribosomal protein S14 type Z