J3_7V2P_004

3D structure

PDB id

7V2P (explore in PDB, NAKB, or RNA 3D Hub)

Description

T.thermophilus 30S ribosome with KsgA, class K5

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CUAG*CGAAG*CGUUAAG

Length

16 nucleotides

Bulged bases

7V2P|1|A|U|849, 7V2P|1|A|A|851

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7V2P_004 not in the Motif Atlas

Homologous match to J3_4LFB_001

Geometric discrepancy: 0.0741

The information below is about J3_4LFB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_85054.4

Basepair signature

cWW-tWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

3

Unit IDs

7V2P|1|A|C|810
7V2P|1|A|U|811
7V2P|1|A|A|812
7V2P|1|A|G|813
*
7V2P|1|A|C|835
7V2P|1|A|G|836
7V2P|1|A|A|837
7V2P|1|A|A|838
7V2P|1|A|G|839
*
7V2P|1|A|C|846
7V2P|1|A|G|847
7V2P|1|A|U|848
7V2P|1|A|U|849
7V2P|1|A|A|850
7V2P|1|A|A|851
7V2P|1|A|G|852

Current chains

Chain A

16s ribosomal RNA

Nearby chains

Chain B

30S ribosomal protein S2

Chain H

30S ribosomal protein S8