J3_7WTM_006

3D structure

PDB id

7WTM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a yeast pre-40S ribosomal subunit - State Dis-E

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

AGAUUAAG*CGCGCAAAU*AGU

Length

20 nucleotides

Bulged bases

7WTM|1|C2|A|47

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7WTM_006 not in the Motif Atlas

Homologous match to J3_8P9A_069

Geometric discrepancy: 0.0791

The information below is about J3_8P9A_069

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_63856.1

Basepair signature

cWW-cWW-cSW-F-cWW-F-tHH-F-cWW-F-F-F-F

Number of instances in this motif group

5

Unit IDs

7WTM|1|C2|A|41
7WTM|1|C2|G|42
7WTM|1|C2|A|43
7WTM|1|C2|U|44
7WTM|1|C2|U|45
7WTM|1|C2|A|46
7WTM|1|C2|A|47
7WTM|1|C2|G|48
*
7WTM|1|C2|C|431
7WTM|1|C2|G|432
7WTM|1|C2|C|433
7WTM|1|C2|G|434
7WTM|1|C2|C|435
7WTM|1|C2|A|436
7WTM|1|C2|A|437
7WTM|1|C2|A|438
7WTM|1|C2|U|439
*
7WTM|1|C2|A|464
7WTM|1|C2|G|465
7WTM|1|C2|U|466

Current chains

Chain C2

18S rRNA

Nearby chains

Chain SJ

40S ribosomal protein S9-A

Chain SX

40S ribosomal protein S23-A