J3_7WTP_004
3D structure
- PDB id
- 7WTP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a yeast pre-40S ribosomal subunit - State Tsr1-2 (with Rps2)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- AUCA*UAACUACUG*CAUUU
- Length
- 18 nucleotides
- Bulged bases
- 7WTP|1|C2|C|934
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7WTP_004 not in the Motif Atlas
- Homologous match to J3_8P9A_074
- Geometric discrepancy: 0.1056
- The information below is about J3_8P9A_074
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_76375.1
- Basepair signature
- cWW-F-cWW-F-cWW-F-cWW-F-tWW-F-cWW
- Number of instances in this motif group
- 1
Unit IDs
7WTP|1|C2|A|881
7WTP|1|C2|U|882
7WTP|1|C2|C|883
7WTP|1|C2|A|884
*
7WTP|1|C2|U|928
7WTP|1|C2|A|929
7WTP|1|C2|A|930
7WTP|1|C2|C|931
7WTP|1|C2|U|932
7WTP|1|C2|A|933
7WTP|1|C2|C|934
7WTP|1|C2|U|935
7WTP|1|C2|G|936
*
7WTP|1|C2|C|943
7WTP|1|C2|A|944
7WTP|1|C2|U|945
7WTP|1|C2|U|946
7WTP|1|C2|U|947
Current chains
- Chain C2
- 18S rRNA
Nearby chains
- Chain CA
- Pre-rRNA-processing protein PNO1
- Chain SB
- 40S ribosomal protein S1-A
- Chain SN
- 40S ribosomal protein S13
- Chain SO
- 40S ribosomal protein S14-A
Coloring options: