J3_7WTQ_006

3D structure

PDB id

7WTQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a yeast pre-40S ribosomal subunit - State Tsr1-2 (without Rps2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

AGAUUAAG*CGCGCAAAU*AGU

Length

20 nucleotides

Bulged bases

7WTQ|1|C2|A|47

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7WTQ_006 not in the Motif Atlas

Homologous match to J3_8C3A_083

Geometric discrepancy: 0.0785

The information below is about J3_8C3A_083

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46317.2

Basepair signature

cWW-F-tWH-cSW-cWW-cWW-F-F-cSW-cWW

Number of instances in this motif group

5

Unit IDs

7WTQ|1|C2|A|41
7WTQ|1|C2|G|42
7WTQ|1|C2|A|43
7WTQ|1|C2|U|44
7WTQ|1|C2|U|45
7WTQ|1|C2|A|46
7WTQ|1|C2|A|47
7WTQ|1|C2|G|48
*
7WTQ|1|C2|C|431
7WTQ|1|C2|G|432
7WTQ|1|C2|C|433
7WTQ|1|C2|G|434
7WTQ|1|C2|C|435
7WTQ|1|C2|A|436
7WTQ|1|C2|A|437
7WTQ|1|C2|A|438
7WTQ|1|C2|U|439
*
7WTQ|1|C2|A|464
7WTQ|1|C2|G|465
7WTQ|1|C2|U|466

Current chains

Chain C2

18S rRNA

Nearby chains

Chain CC

Ribosome biogenesis protein TSR1

Chain SJ

40S ribosomal protein S9-A

Chain SX

40S ribosomal protein S23-A