J3_7WTR_005

3D structure

PDB id

7WTR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a yeast pre-40S ribosomal subunit - State Tsr1-3

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CUA*UUACG*CAAAG

Length

13 nucleotides

Bulged bases

7WTR|1|C2|A|1093

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7WTR_005 not in the Motif Atlas

Homologous match to J3_8C3A_037

Geometric discrepancy: 0.1065

The information below is about J3_8C3A_037

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_95208.1

Basepair signature

cWW-tWW-tWW-F-cWW-F-cWW

Number of instances in this motif group

2

Unit IDs

7WTR|1|C2|C|1037
7WTR|1|C2|U|1038
7WTR|1|C2|A|1039
*
7WTR|1|C2|U|1079
7WTR|1|C2|U|1080
7WTR|1|C2|A|1081
7WTR|1|C2|C|1082
7WTR|1|C2|G|1083
*
7WTR|1|C2|C|1090
7WTR|1|C2|A|1091
7WTR|1|C2|A|1092
7WTR|1|C2|A|1093
7WTR|1|C2|G|1094

Current chains

Chain C2

18S rRNA

Nearby chains

Chain SW

40S ribosomal protein S22-A

Chain Sb

40S ribosomal protein S27-A