J3_7WTS_009

3D structure

PDB id

7WTS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a human pre-40S ribosomal subunit - State UTP14

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CACUG*CGUGAUGG*CGAG

Length

17 nucleotides

Bulged bases

7WTS|1|2|U|1535, 7WTS|1|2|G|1603

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7WTS_009 not in the Motif Atlas

Homologous match to J3_8C3A_044

Geometric discrepancy: 0.2033

The information below is about J3_8C3A_044

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_37047.4

Basepair signature

cWW-cSS-cSH-F-tWH-F-cWW-cSH-F-cWW-F

Number of instances in this motif group

5

Unit IDs

7WTS|1|2|C|1532
7WTS|1|2|A|1533
7WTS|1|2|C|1534
7WTS|1|2|U|1535
7WTS|1|2|G|1536
*
7WTS|1|2|C|1597
7WTS|1|2|G|1598
7WTS|1|2|U|1599
7WTS|1|2|G|1600
7WTS|1|2|A|1601
7WTS|1|2|U|1602
7WTS|1|2|G|1603
7WTS|1|2|G|1604
*
7WTS|1|2|C|1635
7WTS|1|2|G|1636
7WTS|1|2|A|1637
7WTS|1|2|G|1638

Current chains

Chain 2

18S rRNA

Nearby chains

Chain q

Probable 18S rRNA (guanine-N(7))-methyltransferase