J3_7WTU_011

3D structure

PDB id

7WTU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a human pre-40S ribosomal subunit - State RRP12-A1 (without CK1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

AGAUUAAG*CGCGCAAAU*AGU

Length

20 nucleotides

Bulged bases

7WTU|1|2|A|45, 7WTU|1|2|A|46

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7WTU_011 not in the Motif Atlas

Homologous match to J3_8P9A_069

Geometric discrepancy: 0.0528

The information below is about J3_8P9A_069

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46317.4

Basepair signature

cWW-cWW-cSW-F-cWW-F-F-F-F-cWW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

7WTU|1|2|A|40
7WTU|1|2|G|41
7WTU|1|2|A|42
7WTU|1|2|U|43
7WTU|1|2|U|44
7WTU|1|2|A|45
7WTU|1|2|A|46
7WTU|1|2|G|47
*
7WTU|1|2|C|479
7WTU|1|2|G|480
7WTU|1|2|C|481
7WTU|1|2|G|482
7WTU|1|2|C|483
7WTU|1|2|A|484
7WTU|1|2|A|485
7WTU|1|2|A|486
7WTU|1|2|U|487
*
7WTU|1|2|A|512
7WTU|1|2|G|513
7WTU|1|2|U|514

Current chains

Chain 2

18S rRNA

Nearby chains

Chain J

40S ribosomal protein S9

Chain X

40S ribosomal protein S23

Chain u

Pre-rRNA-processing protein TSR1 homolog