J3_7WTV_010

3D structure

PDB id

7WTV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a human pre-40S ribosomal subunit - State RRP12-A2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GGC*GGACAAG*CCCGAGAU

Length

18 nucleotides

Bulged bases

7WTV|1|2|A|1454

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7WTV|1|2|G|1393
7WTV|1|2|G|1394
7WTV|1|2|C|1395
*
7WTV|1|2|G|1450
7WTV|1|2|G|1451
7WTV|1|2|A|1452
7WTV|1|2|C|1453
7WTV|1|2|A|1454
7WTV|1|2|A|1455
7WTV|1|2|G|1456
*
7WTV|1|2|C|1470
7WTV|1|2|C|1471
7WTV|1|2|C|1472
7WTV|1|2|G|1473
7WTV|1|2|A|1474
7WTV|1|2|G|1475
7WTV|1|2|A|1476
7WTV|1|2|U|1477

Current chains

Chain 2

18S rRNA

Nearby chains

Chain K

RRP12-like protein

Chain R

40S ribosomal protein S17

Chain z

Ribosome biogenesis protein SLX9 homolog