J3_7XAM_005

3D structure

PDB id

7XAM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mycobacterium smegmatis 50S ribosomal subunit from Stationary phase of growth

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CGAAAG*CAG*UAAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7XAM_005 not in the Motif Atlas

Homologous match to J3_5J7L_041

Geometric discrepancy: 0.1044

The information below is about J3_5J7L_041

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32852.6

Basepair signature

cWW-tSH-F-F-F-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

7XAM|1|A|C|1413
7XAM|1|A|G|1414
7XAM|1|A|A|1415
7XAM|1|A|A|1416
7XAM|1|A|A|1417
7XAM|1|A|G|1418
*
7XAM|1|A|C|1843
7XAM|1|A|A|1844
7XAM|1|A|G|1845
*
7XAM|1|A|U|1857
7XAM|1|A|A|1858
7XAM|1|A|A|1859
7XAM|1|A|G|1860

Current chains

Chain A

23S rRNA

Nearby chains