J3_7XAM_006

3D structure

PDB id

7XAM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mycobacterium smegmatis 50S ribosomal subunit from Stationary phase of growth

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CAAG*CCCAAAC*GUG

Length

14 nucleotides

Bulged bases

7XAM|1|A|A|1827

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7XAM_006 not in the Motif Atlas

Homologous match to J3_7A0S_007

Geometric discrepancy: 0.0753

The information below is about J3_7A0S_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_47341.1

Basepair signature

cWW-tHH-F-tHW-tHS-tWW-cWW-cWW-F

Number of instances in this motif group

4

Unit IDs

7XAM|1|A|C|1421
7XAM|1|A|A|1422
7XAM|1|A|A|1423
7XAM|1|A|G|1424
*
7XAM|1|A|C|1823
7XAM|1|A|C|1824
7XAM|1|A|C|1825
7XAM|1|A|A|1826
7XAM|1|A|A|1827
7XAM|1|A|A|1828
7XAM|1|A|C|1829
*
7XAM|1|A|G|1838
7XAM|1|A|U|1839
7XAM|1|A|G|1840

Current chains

Chain A

23S rRNA

Nearby chains

Chain d

50S ribosomal protein L34