J3_7XAM_008

3D structure

PDB id

7XAM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mycobacterium smegmatis 50S ribosomal subunit from Stationary phase of growth

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

UUG*CUAAC*GGACAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7XAM_008 not in the Motif Atlas

Homologous match to J3_7A0S_009

Geometric discrepancy: 0.0965

The information below is about J3_7A0S_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_17460.1

Basepair signature

cWW-tHH-cWW-F-tWH-tHS-cWW

Number of instances in this motif group

5

Unit IDs

7XAM|1|A|U|2314
7XAM|1|A|U|2315
7XAM|1|A|G|2316
*
7XAM|1|A|C|2419
7XAM|1|A|U|2420
7XAM|1|A|A|2421
7XAM|1|A|A|2422
7XAM|1|A|C|2423
*
7XAM|1|A|G|2447
7XAM|1|A|G|2448
7XAM|1|A|A|2449
7XAM|1|A|C|2450
7XAM|1|A|A|2451
7XAM|1|A|G|2452

Current chains

Chain A

23S rRNA

Nearby chains

Chain C

50S ribosomal protein L2

Chain H

50S ribosomal protein L9

Chain Y

50S ribosomal protein L28