J3_7XNX_014

3D structure

PDB id

7XNX (explore in PDB, NAKB, or RNA 3D Hub)

Description

High resolution cry-EM structure of the human 80S ribosome from SNORD127+/+ Kasumi-1 cells

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

UAUC*GUU*ACUAAUA

Length

14 nucleotides

Bulged bases

7XNX|1|L1|A|4464, 7XNX|1|L1|U|4465

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7XNX_014 not in the Motif Atlas

Homologous match to J3_5TBW_014

Geometric discrepancy: 0.0748

The information below is about J3_5TBW_014

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_98597.1

Basepair signature

cWW-tWW-cHW-tSH-cWW-tSS-F-cSS-cWW

Number of instances in this motif group

2

Unit IDs

7XNX|1|L1|U|4463
7XNX|1|L1|A|4464
7XNX|1|L1|U|4465
7XNX|1|L1|C|4466
*
7XNX|1|L1|G|4491
7XNX|1|L1|U|4492
7XNX|1|L1|U|4493
*
7XNX|1|L1|A|4507
7XNX|1|L1|C|4508
7XNX|1|L1|U|4509
7XNX|1|L1|A|4510
7XNX|1|L1|A|4511
7XNX|1|L1|U|4512
7XNX|1|L1|A|4513

Current chains

Chain L1

28S rRNA

Nearby chains

Chain LB

60S ribosomal protein L3

Chain LV

60S ribosomal protein L23