J3_7XNY_001

3D structure

PDB id

7XNY (explore in PDB, NAKB, or RNA 3D Hub)

Description

High resolution cry-EM structure of the human 80S ribosome from SNORD127+/- Kasumi-1 cells

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

CAGCG*CGUACG*CCGG

Length

15 nucleotides

Bulged bases

7XNY|1|L1|C|159

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7XNY|1|L1|C|112
7XNY|1|L1|A|113
7XNY|1|L1|G|114
7XNY|1|L1|C|115
7XNY|1|L1|G|116
*
7XNY|1|L1|C|155
7XNY|1|L1|G|156
7XNY|1|L1|U|157
7XNY|1|L1|A|158
7XNY|1|L1|C|159
7XNY|1|L1|G|160
*
7XNY|1|L1|C|275
7XNY|1|L1|C|276
7XNY|1|L1|G|277
7XNY|1|L1|G|278

Current chains

Chain L1

28S rRNA

Nearby chains

Chain LG

60S ribosomal protein L7a

Chain LL

60S ribosomal protein L13

Chain LN

60S ribosomal protein L15

Chain Lh

60S ribosomal protein L35

Chain Li

60S ribosomal protein L36