J3_7XNY_006

3D structure

PDB id

7XNY (explore in PDB, NAKB, or RNA 3D Hub)

Description

High resolution cry-EM structure of the human 80S ribosome from SNORD127+/- Kasumi-1 cells

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

GAC*GCUAAGG*CAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7XNY_006 not in the Motif Atlas

Homologous match to J3_8C3A_005

Geometric discrepancy: 0.3796

The information below is about J3_8C3A_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_28621.3

Basepair signature

cWW-tWW-tHS-tSH-cWW-tSS-F-cSS-cWW

Number of instances in this motif group

7

Unit IDs

7XNY|1|L1|G|1969
7XNY|1|L1|A|1970
7XNY|1|L1|C|1971
*
7XNY|1|L1|G|1995
7XNY|1|L1|C|1996
7XNY|1|L1|U|1997
7XNY|1|L1|A|1998
7XNY|1|L1|A|1999
7XNY|1|L1|G|2000
7XNY|1|L1|G|2001
*
7XNY|1|L1|C|2016
7XNY|1|L1|A|2017
7XNY|1|L1|C|2018

Current chains

Chain L1

28S rRNA

Nearby chains