J3_7XNY_010

3D structure

PDB id

7XNY (explore in PDB, NAKB, or RNA 3D Hub)

Description

High resolution cry-EM structure of the human 80S ribosome from SNORD127+/- Kasumi-1 cells

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

AGAUG*CAGU*AGGGUGUAAAU

Length

20 nucleotides

Bulged bases

7XNY|1|L1|U|2763

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7XNY|1|L1|A|2551
7XNY|1|L1|G|2552
7XNY|1|L1|A|2553
7XNY|1|L1|U|2554
7XNY|1|L1|G|2555
*
7XNY|1|L1|C|2572
7XNY|1|L1|A|2573
7XNY|1|L1|G|2574
7XNY|1|L1|U|2575
*
7XNY|1|L1|A|2757
7XNY|1|L1|G|2758
7XNY|1|L1|G|2759
7XNY|1|L1|G|2760
7XNY|1|L1|U|2761
7XNY|1|L1|G|2762
7XNY|1|L1|U|2763
7XNY|1|L1|A|2764
7XNY|1|L1|A|2765
7XNY|1|L1|A|2766
7XNY|1|L1|U|2767

Current chains

Chain L1

28S rRNA

Nearby chains

Chain LZ

60S ribosomal protein L27