J3_7XNY_014
3D structure
- PDB id
- 7XNY (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- High resolution cry-EM structure of the human 80S ribosome from SNORD127+/- Kasumi-1 cells
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.5 Å
Loop
- Sequence
- CUC*GAG*CAAAAG
- Length
- 12 nucleotides
- Bulged bases
- 7XNY|1|L1|A|4280
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7XNY_014 not in the Motif Atlas
- Homologous match to J3_8C3A_010
- Geometric discrepancy: 0.0964
- The information below is about J3_8C3A_010
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_91491.5
- Basepair signature
- cWW-F-tWW-tHW-cWW-F-cWW
- Number of instances in this motif group
- 7
Unit IDs
7XNY|1|L1|C|4241
7XNY|1|L1|U|4242
7XNY|1|L1|C|4243
*
7XNY|1|L1|G|4267
7XNY|1|L1|A|4268
7XNY|1|L1|G|4269
*
7XNY|1|L1|C|4278
7XNY|1|L1|A|4279
7XNY|1|L1|A|4280
7XNY|1|L1|A|4281
7XNY|1|L1|A|4282
7XNY|1|L1|G|4283
Current chains
- Chain L1
- 28S rRNA
Nearby chains
- Chain L2
- 5S ribosomal RNA; 5S rRNA
- Chain LD
- 60S ribosomal protein L5
- Chain LJ
- 60S ribosomal protein L11
- Chain LT
- 60S ribosomal protein L21
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