J3_7XNY_032
3D structure
- PDB id
- 7XNY (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- High resolution cry-EM structure of the human 80S ribosome from SNORD127+/- Kasumi-1 cells
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.5 Å
Loop
- Sequence
- CGAUAGUCAACAAGUAC*GGAAAG*CUCG
- Length
- 27 nucleotides
- Bulged bases
- 7XNY|1|L1|U|354, 7XNY|1|L1|A|362, 7XNY|1|L3|C|23
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7XNY_032 not in the Motif Atlas
- Homologous match to J3_8P9A_045
- Geometric discrepancy: 0.0527
- The information below is about J3_8P9A_045
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_07616.1
- Basepair signature
- cWW-cSS-tSS-tSW-tHW-cWW-tWH-F-F-tHH-tSS-tWH-F-tHS-cWW-F-cSH
- Number of instances in this motif group
- 10
Unit IDs
7XNY|1|L1|C|351
7XNY|1|L1|G|352
7XNY|1|L1|A|353
7XNY|1|L1|U|354
7XNY|1|L1|A|355
7XNY|1|L1|G|356
7XNY|1|L1|U|357
7XNY|1|L1|C|358
7XNY|1|L1|A|359
7XNY|1|L1|A|360
7XNY|1|L1|C|361
7XNY|1|L1|A|362
7XNY|1|L1|A|363
7XNY|1|L1|G|364
7XNY|1|L1|U|365
7XNY|1|L1|A|366
7XNY|1|L1|C|367
*
7XNY|1|L1|G|374
7XNY|1|L1|G|375
7XNY|1|L1|A|376
7XNY|1|L1|A|377
7XNY|1|L1|A|378
7XNY|1|L1|G|379
*
7XNY|1|L3|C|21
7XNY|1|L3|U|22
7XNY|1|L3|C|23
7XNY|1|L3|G|24
Current chains
- Chain L1
- 28S rRNA
- Chain L3
- 5.8S rRNA
Nearby chains
- Chain LC
- 60S ribosomal protein L4
- Chain LY
- 60S ribosomal protein L26
- Chain Lj
- 60S ribosomal protein L37
- Chain Ll
- 60S ribosomal protein L39
Coloring options: