J3_7XNY_038

3D structure

PDB id

7XNY (explore in PDB, NAKB, or RNA 3D Hub)

Description

High resolution cry-EM structure of the human 80S ribosome from SNORD127+/- Kasumi-1 cells

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

AGAAG*CC*GAAAAU

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7XNY_038 not in the Motif Atlas

Homologous match to J3_8P9A_058

Geometric discrepancy: 0.143

The information below is about J3_8P9A_058

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_08594.1

Basepair signature

cWW-tSH-tHH-F-F-cWW-F-cWW

Number of instances in this motif group

6

Unit IDs

7XNY|1|L1|A|2598
7XNY|1|L1|G|2599
7XNY|1|L1|A|2600
7XNY|1|L1|A|2601
7XNY|1|L1|G|2602
*
7XNY|1|L1|C|2737
7XNY|1|L1|C|2738
*
7XNY|1|L1|G|2742
7XNY|1|L1|A|2743
7XNY|1|L1|A|2744
7XNY|1|L1|A|2745
7XNY|1|L1|A|2746
7XNY|1|L1|U|2747

Current chains

Chain L1

28S rRNA

Nearby chains

Chain LA

60S ribosomal protein L8

Chain Lg

60S ribosomal protein L34

Chain Lp

60S ribosomal protein L37a