J3_7XNY_042
3D structure
- PDB id
- 7XNY (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- High resolution cry-EM structure of the human 80S ribosome from SNORD127+/- Kasumi-1 cells
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.5 Å
Loop
- Sequence
- AG*CGC(A2M)AAU*(A2M)GU
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: A2M
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7XNY_042 not in the Motif Atlas
- Geometric match to J3_4V88_078
- Geometric discrepancy: 0.0886
- The information below is about J3_4V88_078
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_67856.1
- Basepair signature
- cWW-F-cWW-F-F-cSW-F-cWW
- Number of instances in this motif group
- 5
Unit IDs
7XNY|1|S2|A|40
7XNY|1|S2|G|41
*
7XNY|1|S2|C|481
7XNY|1|S2|G|482
7XNY|1|S2|C|483
7XNY|1|S2|A2M|484
7XNY|1|S2|A|485
7XNY|1|S2|A|486
7XNY|1|S2|U|487
*
7XNY|1|S2|A2M|512
7XNY|1|S2|G|513
7XNY|1|S2|U|514
Current chains
- Chain S2
- 18S rRNA
Nearby chains
- Chain SJ
- 40S ribosomal protein S9
- Chain SX
- 40S ribosomal protein S23
Coloring options: