J3_7Y7D_020
3D structure
- PDB id
- 7Y7D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Bacterial Ribosome with human tRNA Asp(Q34) and mRNA(GAU)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.58 Å
Loop
- Sequence
- GCCUAAC*GGGGAAUAU*AGC
- Length
- 19 nucleotides
- Bulged bases
- 7Y7D|1|A|C|48, 7Y7D|1|A|A|50, 7Y7D|1|A|A|51
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7Y7D_020 not in the Motif Atlas
- Homologous match to J3_5J7L_050
- Geometric discrepancy: 0.0799
- The information below is about J3_5J7L_050
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_46317.4
- Basepair signature
- cWW-cWW-cSW-F-cWW-F-F-F-F-cWW-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
7Y7D|1|A|G|46
7Y7D|1|A|C|47
7Y7D|1|A|C|48
7Y7D|1|A|U|49
7Y7D|1|A|A|50
7Y7D|1|A|A|51
7Y7D|1|A|C|52
*
7Y7D|1|A|G|359
7Y7D|1|A|G|360
7Y7D|1|A|G|361
7Y7D|1|A|G|362
7Y7D|1|A|A|363
7Y7D|1|A|A|364
7Y7D|1|A|U|365
7Y7D|1|A|A|366
7Y7D|1|A|U|367
*
7Y7D|1|A|A|393
7Y7D|1|A|G|394
7Y7D|1|A|C|395
Current chains
- Chain A
- 16S rRNA
Nearby chains
- Chain L
- 30S ribosomal protein S12
- Chain P
- 30S ribosomal protein S16
Coloring options: