J3_7YLA_006

3D structure

PDB id

7YLA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 50S-HflX complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.52 Å

Loop

Sequence

CGGAAG*CAG*CAAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7YLA_006 not in the Motif Atlas

Homologous match to J3_5J7L_041

Geometric discrepancy: 0.0544

The information below is about J3_5J7L_041

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32852.6

Basepair signature

cWW-tSH-F-F-F-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

7YLA|1|I|C|1298
7YLA|1|I|G|1299
7YLA|1|I|G|1300
7YLA|1|I|A|1301
7YLA|1|I|A|1302
7YLA|1|I|G|1303
*
7YLA|1|I|C|1625
7YLA|1|I|A|1626
7YLA|1|I|G|1627
*
7YLA|1|I|C|1639
7YLA|1|I|A|1640
7YLA|1|I|A|1641
7YLA|1|I|G|1642

Current chains

Chain I

Escherichia coli strain K-12 substr. MG1655_TMP32XR1 chromosome, complete genome

Nearby chains