J3_7YLA_019

3D structure

PDB id

7YLA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 50S-HflX complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.52 Å

Loop

Sequence

GGGACG*CC*GAAAAGC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7YLA_019 not in the Motif Atlas

Homologous match to J3_5J7L_069

Geometric discrepancy: 0.0671

The information below is about J3_5J7L_069

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_34864.2

Basepair signature

cWW-F-cWW-F-tHH-F-tHS-tHS-cWW

Number of instances in this motif group

4

Unit IDs

7YLA|1|I|G|1424
7YLA|1|I|G|1425
7YLA|1|I|G|1426
7YLA|1|I|A|1427
7YLA|1|I|C|1428
7YLA|1|I|G|1429
*
7YLA|1|I|C|1564
7YLA|1|I|C|1565
*
7YLA|1|I|G|1568
7YLA|1|I|A|1569
7YLA|1|I|A|1570
7YLA|1|I|A|1571
7YLA|1|I|A|1572
7YLA|1|I|G|1573
7YLA|1|I|C|1574

Current chains

Chain I

Escherichia coli strain K-12 substr. MG1655_TMP32XR1 chromosome, complete genome

Nearby chains

Chain K

50S ribosomal protein L2