J3_7Z20_005

3D structure

PDB id

7Z20 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S E. coli ribosome with an extended uL23 loop from Candidatus marinimicrobia and a stalled filamin domain 5 nascent chain

Experimental method

ELECTRON MICROSCOPY

Resolution

2.29 Å

Loop

Sequence

CAG*CGAAC*GAUG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7Z20_005 not in the Motif Atlas

Homologous match to J3_8VTW_002

Geometric discrepancy: 0.0546

The information below is about J3_8VTW_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_44724.5

Basepair signature

cWW-tSH-F-cWW-tHS-cWW-F

Number of instances in this motif group

6

Unit IDs

7Z20|1|b|C|697
7Z20|1|b|A|698
7Z20|1|b|G|699
*
7Z20|1|b|C|731
7Z20|1|b|G|732
7Z20|1|b|A|733
7Z20|1|b|A|734
7Z20|1|b|C|735
*
7Z20|1|b|G|759
7Z20|1|b|A|760
7Z20|1|b|U|761
7Z20|1|b|G|762

Current chains

Chain b

23S rRNA

Nearby chains

Chain c

50S ribosomal protein L2