J3_7ZJW_006

3D structure

PDB id

7ZJW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome as it decodes the Sec-UGA codon

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CGAAGUG*CAA*UCUG

Length

14 nucleotides

Bulged bases

7ZJW|1|L5|A|2239

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7ZJW_006 not in the Motif Atlas

Homologous match to J3_8C3A_006

Geometric discrepancy: 0.0901

The information below is about J3_8C3A_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_10154.2

Basepair signature

cWW-tWW-tHW-cWW-tSH-cWW-cWW-F-F

Number of instances in this motif group

3

Unit IDs

7ZJW|1|L5|C|2236
7ZJW|1|L5|G|2237
7ZJW|1|L5|A|2238
7ZJW|1|L5|A|2239
7ZJW|1|L5|G|2240
7ZJW|1|L5|U|2241
7ZJW|1|L5|G|2242
*
7ZJW|1|L5|C|2648
7ZJW|1|L5|A|2649
7ZJW|1|L5|A|2650
*
7ZJW|1|L5|U|2662
7ZJW|1|L5|C|2663
7ZJW|1|L5|U|2664
7ZJW|1|L5|G|2665

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LU

60S ribosomal protein L19

Chain Lj

60S ribosomal protein L34