J3_7ZJW_009

3D structure

PDB id

7ZJW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome as it decodes the Sec-UGA codon

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

AGAUG*CAGU*AGGGUGUAAAU

Length

20 nucleotides

Bulged bases

7ZJW|1|L5|U|2606

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7ZJW|1|L5|A|2394
7ZJW|1|L5|G|2395
7ZJW|1|L5|A|2396
7ZJW|1|L5|U|2397
7ZJW|1|L5|G|2398
*
7ZJW|1|L5|C|2415
7ZJW|1|L5|A|2416
7ZJW|1|L5|G|2417
7ZJW|1|L5|U|2418
*
7ZJW|1|L5|A|2600
7ZJW|1|L5|G|2601
7ZJW|1|L5|G|2602
7ZJW|1|L5|G|2603
7ZJW|1|L5|U|2604
7ZJW|1|L5|G|2605
7ZJW|1|L5|U|2606
7ZJW|1|L5|A|2607
7ZJW|1|L5|A|2608
7ZJW|1|L5|A|2609
7ZJW|1|L5|U|2610

Current chains

Chain L5

28S rRNA

Nearby chains

Chain Lc

60S ribosomal protein L27