J3_7ZJW_011
3D structure
- PDB id
- 7ZJW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome as it decodes the Sec-UGA codon
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- CGG*CUGAC*GGACAG
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7ZJW_011 not in the Motif Atlas
- Geometric match to J3_8VTW_006
- Geometric discrepancy: 0.127
- The information below is about J3_8VTW_006
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_89368.4
- Basepair signature
- cWW-tSH-tHW-F-cWW-tHH-cWW
- Number of instances in this motif group
- 3
Unit IDs
7ZJW|1|L5|C|3669
7ZJW|1|L5|G|3670
7ZJW|1|L5|G|3671
*
7ZJW|1|L5|C|3802
7ZJW|1|L5|U|3803
7ZJW|1|L5|G|3804
7ZJW|1|L5|A|3805
7ZJW|1|L5|C|3806
*
7ZJW|1|L5|G|3914
7ZJW|1|L5|G|3915
7ZJW|1|L5|A|3916
7ZJW|1|L5|C|3917
7ZJW|1|L5|A|3918
7ZJW|1|L5|G|3919
Current chains
- Chain L5
- 28S rRNA
Nearby chains
- Chain LD
- 60S ribosomal protein uL2
- Chain LJ
- 60S ribosomal protein eL8
- Chain LQ
- 60S ribosomal protein L15
- Chain Ll
- 60S ribosomal protein L36
Coloring options: