J3_7ZJW_027
3D structure
- PDB id
- 7ZJW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome as it decodes the Sec-UGA codon
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- UG*UGUC*GAUAA
- Length
- 11 nucleotides
- Bulged bases
- 7ZJW|1|S2|A|1379
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7ZJW_027 not in the Motif Atlas
- Homologous match to J3_8P9A_081
- Geometric discrepancy: 0.0998
- The information below is about J3_8P9A_081
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_76043.3
- Basepair signature
- cWW-cWW-tSS-F-F-F-F-cWW
- Number of instances in this motif group
- 3
Unit IDs
7ZJW|1|S2|U|1351
7ZJW|1|S2|G|1352
*
7ZJW|1|S2|U|1361
7ZJW|1|S2|G|1362
7ZJW|1|S2|U|1363
7ZJW|1|S2|C|1364
*
7ZJW|1|S2|G|1376
7ZJW|1|S2|A|1377
7ZJW|1|S2|U|1378
7ZJW|1|S2|A|1379
7ZJW|1|S2|A|1380
Current chains
- Chain S2
- 18S rRNA
Nearby chains
- Chain SL
- 40S ribosomal protein SA
- Chain SN
- 40S ribosomal protein uS5
- Chain Sc
- 40S ribosomal protein eS17
Coloring options: