3D structure

PDB id
7ZJW (explore in PDB, NAKB, or RNA 3D Hub)
Description
Rabbit 80S ribosome as it decodes the Sec-UGA codon
Experimental method
ELECTRON MICROSCOPY
Resolution
2.8 Å

Loop

Sequence
UG*UGUC*GAUAA
Length
11 nucleotides
Bulged bases
7ZJW|1|S2|A|1379
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_7ZJW_027 not in the Motif Atlas
Homologous match to J3_8P9A_081
Geometric discrepancy: 0.0998
The information below is about J3_8P9A_081
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_76043.3
Basepair signature
cWW-cWW-tSS-F-F-F-F-cWW
Number of instances in this motif group
3

Unit IDs

7ZJW|1|S2|U|1351
7ZJW|1|S2|G|1352
*
7ZJW|1|S2|U|1361
7ZJW|1|S2|G|1362
7ZJW|1|S2|U|1363
7ZJW|1|S2|C|1364
*
7ZJW|1|S2|G|1376
7ZJW|1|S2|A|1377
7ZJW|1|S2|U|1378
7ZJW|1|S2|A|1379
7ZJW|1|S2|A|1380

Current chains

Chain S2
18S rRNA

Nearby chains

Chain SL
40S ribosomal protein SA
Chain SN
40S ribosomal protein uS5
Chain Sc
40S ribosomal protein eS17

Coloring options:


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