J3_7ZJW_031
3D structure
- PDB id
- 7ZJW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome as it decodes the Sec-UGA codon
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- CGAUAGUCAACAAGUAC*GGAAAG*CUCG
- Length
- 27 nucleotides
- Bulged bases
- 7ZJW|1|L5|U|354, 7ZJW|1|L5|A|362, 7ZJW|1|L8|C|23
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7ZJW_031 not in the Motif Atlas
- Homologous match to J3_8P9A_045
- Geometric discrepancy: 0.0582
- The information below is about J3_8P9A_045
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_30040.2
- Basepair signature
- cWW-tWH-F-cWW-tSS-tHH-cSS-tWH-tSW-tHS-cWW-tWH-F-cSH-tSS-F-F
- Number of instances in this motif group
- 7
Unit IDs
7ZJW|1|L5|C|351
7ZJW|1|L5|G|352
7ZJW|1|L5|A|353
7ZJW|1|L5|U|354
7ZJW|1|L5|A|355
7ZJW|1|L5|G|356
7ZJW|1|L5|U|357
7ZJW|1|L5|C|358
7ZJW|1|L5|A|359
7ZJW|1|L5|A|360
7ZJW|1|L5|C|361
7ZJW|1|L5|A|362
7ZJW|1|L5|A|363
7ZJW|1|L5|G|364
7ZJW|1|L5|U|365
7ZJW|1|L5|A|366
7ZJW|1|L5|C|367
*
7ZJW|1|L5|G|374
7ZJW|1|L5|G|375
7ZJW|1|L5|A|376
7ZJW|1|L5|A|377
7ZJW|1|L5|A|378
7ZJW|1|L5|G|379
*
7ZJW|1|L8|C|21
7ZJW|1|L8|U|22
7ZJW|1|L8|C|23
7ZJW|1|L8|G|24
Current chains
- Chain L5
- 28S rRNA
- Chain L8
- 5.8S rRNA
Nearby chains
- Chain LF
- 60S ribosomal protein L4
- Chain Lb
- 60S ribosomal protein L26
- Chain Lm
- 60S ribosomal protein L37
- Chain Lo
- 60S ribosomal protein eL39
Coloring options: