J3_7ZJW_034

3D structure

PDB id

7ZJW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome as it decodes the Sec-UGA codon

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

UU*AGAAG*CGUGGA

Length

13 nucleotides

Bulged bases

7ZJW|1|L5|A|1744, 7ZJW|1|L5|U|1773

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7ZJW_034 not in the Motif Atlas

Homologous match to J3_8P9A_051

Geometric discrepancy: 0.5152

The information below is about J3_8P9A_051

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_84137.1

Basepair signature

cWW-cWW-cHW-F-cSS-F-cWW

Number of instances in this motif group

4

Unit IDs

7ZJW|1|L5|U|1665
7ZJW|1|L5|U|1666
*
7ZJW|1|L5|A|1741
7ZJW|1|L5|G|1742
7ZJW|1|L5|A|1743
7ZJW|1|L5|A|1744
7ZJW|1|L5|G|1745
*
7ZJW|1|L5|C|1771
7ZJW|1|L5|G|1772
7ZJW|1|L5|U|1773
7ZJW|1|L5|G|1774
7ZJW|1|L5|G|1775
7ZJW|1|L5|A|1776

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LI

60S ribosomal Protein uL30

Chain LW

60S ribosomal protein eL21

Chain Le

60S ribosomal protein L29