J3_7ZJW_036

3D structure

PDB id

7ZJW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome as it decodes the Sec-UGA codon

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

AGAAG*CC*GAAAAU

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7ZJW_036 not in the Motif Atlas

Homologous match to J3_8P9A_058

Geometric discrepancy: 0.1478

The information below is about J3_8P9A_058

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_12393.2

Basepair signature

cWW-tSH-tHH-F-F-cWW-F-cWW

Number of instances in this motif group

3

Unit IDs

7ZJW|1|L5|A|2441
7ZJW|1|L5|G|2442
7ZJW|1|L5|A|2443
7ZJW|1|L5|A|2444
7ZJW|1|L5|G|2445
*
7ZJW|1|L5|C|2580
7ZJW|1|L5|C|2581
*
7ZJW|1|L5|G|2585
7ZJW|1|L5|A|2586
7ZJW|1|L5|A|2587
7ZJW|1|L5|A|2588
7ZJW|1|L5|A|2589
7ZJW|1|L5|U|2590

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LD

60S ribosomal protein uL2

Chain Lj

60S ribosomal protein L34

Chain Lr

60S ribosomal protein eL43