J3_7ZJW_039

3D structure

PDB id

7ZJW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome as it decodes the Sec-UGA codon

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GUUG*CCUUC*GCACCGCACGUUC

Length

22 nucleotides

Bulged bases

7ZJW|1|L5|U|4621, 7ZJW|1|L5|A|4677, 7ZJW|1|L5|C|4679, 7ZJW|1|L5|A|4682, 7ZJW|1|L5|C|4683

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7ZJW|1|L5|G|4498
7ZJW|1|L5|U|4499
7ZJW|1|L5|U|4500
7ZJW|1|L5|G|4501
*
7ZJW|1|L5|C|4618
7ZJW|1|L5|C|4619
7ZJW|1|L5|U|4620
7ZJW|1|L5|U|4621
7ZJW|1|L5|C|4622
*
7ZJW|1|L5|G|4675
7ZJW|1|L5|C|4676
7ZJW|1|L5|A|4677
7ZJW|1|L5|C|4678
7ZJW|1|L5|C|4679
7ZJW|1|L5|G|4680
7ZJW|1|L5|C|4681
7ZJW|1|L5|A|4682
7ZJW|1|L5|C|4683
7ZJW|1|L5|G|4684
7ZJW|1|L5|U|4685
7ZJW|1|L5|U|4686
7ZJW|1|L5|C|4687

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LH

60S ribosomal protein L6

Chain LP

60S ribosomal protein L14

Chain LR

60S ribosomal protein uL13

Chain Li

60S ribosomal protein eL33