J3_7ZJW_045
3D structure
- PDB id
- 7ZJW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome as it decodes the Sec-UGA codon
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- C(PSU)UAAUU(PSU)*GGGAAACCUCAC*GGCUG
- Length
- 25 nucleotides
- Bulged bases
- 7ZJW|1|S2|G|1257, 7ZJW|1|S2|A|1259, 7ZJW|1|S2|A|1261
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7ZJW_045 not in the Motif Atlas
- Homologous match to J3_8P9A_078
- Geometric discrepancy: 0.1378
- The information below is about J3_8P9A_078
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_83516.4
- Basepair signature
- cWW-tWW-F-F-F-F-F-tSS-cWW-F-F-cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
7ZJW|1|S2|C|1238
7ZJW|1|S2|PSU|1239
7ZJW|1|S2|U|1240
7ZJW|1|S2|A|1241
7ZJW|1|S2|A|1242
7ZJW|1|S2|U|1243
7ZJW|1|S2|U|1244
7ZJW|1|S2|PSU|1245
*
7ZJW|1|S2|G|1256
7ZJW|1|S2|G|1257
7ZJW|1|S2|G|1258
7ZJW|1|S2|A|1259
7ZJW|1|S2|A|1260
7ZJW|1|S2|A|1261
7ZJW|1|S2|C|1262
7ZJW|1|S2|C|1263
7ZJW|1|S2|U|1264
7ZJW|1|S2|C|1265
7ZJW|1|S2|A|1266
7ZJW|1|S2|C|1267
*
7ZJW|1|S2|G|1517
7ZJW|1|S2|G|1518
7ZJW|1|S2|C|1519
7ZJW|1|S2|U|1520
7ZJW|1|S2|G|1521
Current chains
- Chain S2
- 18S rRNA
Nearby chains
- Chain SD
- 40S ribosomal protein S27a
- Chain SH
- 40S ribosomal protein uS14
- Chain Sa
- 40S ribosomal protein uS19
- Chain Sd
- 40S ribosomal protein S18
- Chain Sf
- 40S ribosomal protein uS10
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