J3_7ZJX_003
3D structure
- PDB id
- 7ZJX (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome programmed with SECIS and SBP2
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- UGA(A2M)C(PSU)A*UAG*CGAA
- Length
- 14 nucleotides
- Bulged bases
- 7ZJX|1|L5|G|1596
- QA status
- Modified nucleotides: A2M, PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7ZJX_003 not in the Motif Atlas
- Homologous match to J3_8C3A_003
- Geometric discrepancy: 0.1658
- The information below is about J3_8C3A_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_39238.5
- Basepair signature
- cWW-tWH-cWW-tSW-F-F-cWW
- Number of instances in this motif group
- 7
Unit IDs
7ZJX|1|L5|U|1486
7ZJX|1|L5|G|1487
7ZJX|1|L5|A|1488
7ZJX|1|L5|A2M|1489
7ZJX|1|L5|C|1490
7ZJX|1|L5|PSU|1491
7ZJX|1|L5|A|1492
*
7ZJX|1|L5|U|1577
7ZJX|1|L5|A|1578
7ZJX|1|L5|G|1579
*
7ZJX|1|L5|C|1595
7ZJX|1|L5|G|1596
7ZJX|1|L5|A|1597
7ZJX|1|L5|A|1598
Current chains
- Chain L5
- 28S rRNA
Nearby chains
- Chain LD
- 60S ribosomal protein uL2
- Chain LQ
- Ribosomal protein L15
- Chain Lm
- Ribosomal protein L37
- Chain Lo
- 60S ribosomal protein eL39
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