J3_7ZJX_005

3D structure

PDB id

7ZJX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome programmed with SECIS and SBP2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UU*AGAAG*CGUGGA

Length

13 nucleotides

Bulged bases

7ZJX|1|L5|A|1744, 7ZJX|1|L5|U|1773

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7ZJX_005 not in the Motif Atlas

Homologous match to J3_8P9A_051

Geometric discrepancy: 0.5385

The information below is about J3_8P9A_051

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_09667.1

Basepair signature

cWW-cWW-F-F-cSS-F-F-cWW

Number of instances in this motif group

2

Unit IDs

7ZJX|1|L5|U|1665
7ZJX|1|L5|U|1666
*
7ZJX|1|L5|A|1741
7ZJX|1|L5|G|1742
7ZJX|1|L5|A|1743
7ZJX|1|L5|A|1744
7ZJX|1|L5|G|1745
*
7ZJX|1|L5|C|1771
7ZJX|1|L5|G|1772
7ZJX|1|L5|U|1773
7ZJX|1|L5|G|1774
7ZJX|1|L5|G|1775
7ZJX|1|L5|A|1776

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LI

60S ribosomal Protein uL30

Chain LW

60S ribosomal protein L21

Chain Le

60S ribosomal protein L29