J3_7ZJX_008

3D structure

PDB id

7ZJX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome programmed with SECIS and SBP2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GAAG*CC(A2M)UAUC*GUC

Length

14 nucleotides

Bulged bases

7ZJX|1|L5|U|2631, 7ZJX|1|L5|A|2632

QA status

Modified nucleotides: A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7ZJX_008 not in the Motif Atlas

Homologous match to J3_8C3A_007

Geometric discrepancy: 0.1039

The information below is about J3_8C3A_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_74051.1

Basepair signature

cWW-tSH-tWW-tHW-F-F-cWW-cWW

Number of instances in this motif group

3

Unit IDs

7ZJX|1|L5|G|2245
7ZJX|1|L5|A|2246
7ZJX|1|L5|A|2247
7ZJX|1|L5|G|2248
*
7ZJX|1|L5|C|2628
7ZJX|1|L5|C|2629
7ZJX|1|L5|A2M|2630
7ZJX|1|L5|U|2631
7ZJX|1|L5|A|2632
7ZJX|1|L5|U|2633
7ZJX|1|L5|C|2634
*
7ZJX|1|L5|G|2643
7ZJX|1|L5|U|2644
7ZJX|1|L5|C|2645

Current chains

Chain L5

28S rRNA

Nearby chains

Chain Lj

60S ribosomal protein L34

Chain Lm

Ribosomal protein L37

Chain Lo

60S ribosomal protein eL39