J3_7ZJX_014

3D structure

PDB id

7ZJX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome programmed with SECIS and SBP2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UAUC*GUU*ACUAAUA

Length

14 nucleotides

Bulged bases

7ZJX|1|L5|A|4210, 7ZJX|1|L5|U|4211

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7ZJX_014 not in the Motif Atlas

Homologous match to J3_8C3A_011

Geometric discrepancy: 0.1006

The information below is about J3_8C3A_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_98597.1

Basepair signature

cWW-tWW-cHW-tSH-cWW-tSS-F-cSS-cWW

Number of instances in this motif group

2

Unit IDs

7ZJX|1|L5|U|4209
7ZJX|1|L5|A|4210
7ZJX|1|L5|U|4211
7ZJX|1|L5|C|4212
*
7ZJX|1|L5|G|4237
7ZJX|1|L5|U|4238
7ZJX|1|L5|U|4239
*
7ZJX|1|L5|A|4253
7ZJX|1|L5|C|4254
7ZJX|1|L5|U|4255
7ZJX|1|L5|A|4256
7ZJX|1|L5|A|4257
7ZJX|1|L5|U|4258
7ZJX|1|L5|A|4259

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LE

60S ribosomal protein uL3

Chain LY

60S ribosomal protein L23