J3_7ZJX_024
3D structure
- PDB id
- 7ZJX (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome programmed with SECIS and SBP2
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- UGGA*UAC*G(7MG)AA
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: 7MG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7ZJX_024 not in the Motif Atlas
- Homologous match to J3_8C3A_039
- Geometric discrepancy: 0.1171
- The information below is about J3_8C3A_039
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_52655.3
- Basepair signature
- cWW-tSH-cWW-F-cWW-cWW
- Number of instances in this motif group
- 4
Unit IDs
7ZJX|1|S2|U|1226
7ZJX|1|S2|G|1227
7ZJX|1|S2|G|1228
7ZJX|1|S2|A|1229
*
7ZJX|1|S2|U|1531
7ZJX|1|S2|A|1532
7ZJX|1|S2|C|1533
*
7ZJX|1|S2|G|1639
7ZJX|1|S2|7MG|1640
7ZJX|1|S2|A|1641
7ZJX|1|S2|A|1642
Current chains
- Chain S2
- 18S rRNA
Nearby chains
- Chain SQ
- Ribosomal protein S5
- Chain Sb
- 40S ribosomal protein uS9
- Chain Sd
- 40S ribosomal protein S18
- Chain Se
- 40S Ribosomal protein eS19
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