J3_7ZJX_026
3D structure
- PDB id
- 7ZJX (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome programmed with SECIS and SBP2
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CCGGAC*GGGUG*UUAGAUG
- Length
- 18 nucleotides
- Bulged bases
- 7ZJX|1|S2|G|1275, 7ZJX|1|S2|G|1508, 7ZJX|1|S2|U|1510
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7ZJX_026 not in the Motif Atlas
- Homologous match to J3_8C3A_041
- Geometric discrepancy: 0.1421
- The information below is about J3_8C3A_041
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_23728.1
- Basepair signature
- cWW-tWH-F-F-tHS-cWW-cWW-cWW-F
- Number of instances in this motif group
- 2
Unit IDs
7ZJX|1|S2|C|1273
7ZJX|1|S2|C|1274
7ZJX|1|S2|G|1275
7ZJX|1|S2|G|1276
7ZJX|1|S2|A|1277
7ZJX|1|S2|C|1278
*
7ZJX|1|S2|G|1321
7ZJX|1|S2|G|1322
7ZJX|1|S2|G|1323
7ZJX|1|S2|U|1324
7ZJX|1|S2|G|1325
*
7ZJX|1|S2|U|1505
7ZJX|1|S2|U|1506
7ZJX|1|S2|A|1507
7ZJX|1|S2|G|1508
7ZJX|1|S2|A|1509
7ZJX|1|S2|U|1510
7ZJX|1|S2|G|1511
Current chains
- Chain S2
- 18S rRNA
Nearby chains
- Chain SD
- Ubiquitin carboxyl extension protein 80
- Chain SH
- 40S ribosomal protein S29
- Chain SV
- S10_plectin domain-containing protein
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