J3_7ZOD_016

3D structure

PDB id

7ZOD (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S E. coli ribosome with an extended uL23 loop from Candidatus marinimicrobia

Experimental method

ELECTRON MICROSCOPY

Resolution

2.56 Å

Loop

Sequence

UCGACCC*GGAAA*UA

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7ZOD_016 not in the Motif Atlas

Homologous match to J3_7A0S_018

Geometric discrepancy: 0.5736

The information below is about J3_7A0S_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_94309.1

Basepair signature

cWW-F-cWW-F-F-F-F-F-cWW-F

Number of instances in this motif group

9

Unit IDs

7ZOD|1|b|U|1344
7ZOD|1|b|C|1345
7ZOD|1|b|G|1346
7ZOD|1|b|A|1347
7ZOD|1|b|C|1348
7ZOD|1|b|C|1349
7ZOD|1|b|C|1350
*
7ZOD|1|b|G|1381
7ZOD|1|b|G|1382
7ZOD|1|b|A|1383
7ZOD|1|b|A|1384
7ZOD|1|b|A|1385
*
7ZOD|1|b|U|1402
7ZOD|1|b|A|1403

Current chains

Chain b

23S rRNA

Nearby chains

Chain t

50S ribosomal protein L23